Five Shopify Plus fraud prevention strategies for frictionless checkout

Scaling on Shopify Plus presents a classic catch-22 for high-growth merchants. As your transaction volume increases, so does your exposure to fraud. The natural reaction is to tighten defenses—implementing stricter filters, expanding manual review teams, and adding friction to the checkout process.

The challenge isn’t just stopping bad orders; it’s doing so without adding friction that drives away good customers. Many merchants find themselves caught in a “growth paradox”: the tools and rules they use to block fraud end up throttling the very growth they’re trying to achieve.

Rigid fraud rules that block bad actors inevitably block good customers, too. In the race to prevent chargebacks, merchants inadvertently restrain their own growth through false declines and poor customer experiences.

How do you stop fraud without slowing down the very sales velocity you are working to build? The solution lies in moving beyond rigid rules and embracing a strategy focused on automation, precision, and financial confidence.

Here is how Shopify Plus merchants can move beyond static rules and manual reviews to a strategy that protects revenue and enhances the customer experience.

The hidden costs of slowing down checkout 

Before implementing a solution, it is necessary to understand the true cost of fraud. Most merchants focus on direct fraud losses—the cost of goods sold and chargeback fees. While significant, these costs are often dwarfed by the hidden damage caused by blunt prevention tools.

False declines damage lifetime value

When a legitimate customer is blocked by an over-aggressive fraud filter, the cost isn’t just the lost sale value of that single cart. It is the loss of that customer’s lifetime value. Globally, businesses lose $308 billion due to false decline (Nuvei). Studies suggest that 42 percent of customers will not return to a merchant after a false decline, often turning to a competitor immediately. In many cases, the revenue lost to false declines exceeds the losses from actual fraud.

Operational bottlenecks

Manual review processes are inherently unscalable. And as order volumes spike during peak seasons or flash sales, small fraud teams become overwhelmed. This leads to shipping delays and operational drag, forcing merchants to choose between reviewing orders (slowing fulfillment) or auto-approving risky transactions ( increasing the risk of chargebacks).

Compliance risks (VAMP)

For Shopify Plus merchants, high chargeback rates bring existential risks beyond just fees. Visa’s Visa Acquiring Monitoring Program (VAMP) monitors chargeback ratios closely. While tools like Shopify Protect cover the cost of some chargebacks (on Shop Pay), they do not protect a merchant’s overall VAMP standing. Exceeding these thresholds can lead to total account termination—an existential risk that requires full-volume protection.

1. The shift from rules to identity intelligence

Static rules (e.g., “block orders over $500”) fail because they can’t adapt to dynamic fraud trends. To truly reduce declines and maximize approval rates while minimizing risk, merchants must shift to machine learning ensembles that analyze thousands of data points instantly across a broad network, catch patterns that point to a good shopper or bad actor, and automatically approve or deny that order based on the true identity and intent of the shopper. They look at behavioral analytics, device fingerprinting, and historical data across a global network of merchants.

This ensures dynamic decisioning that adapts to new threats without manual intervention. By using identity clustering to link disparate accounts, Riskified’s Policy Protect identifies up to 15x more cases of abuse than traditional methods. This strategic pillar is essential for safeguarding margins as you scale.

2. Optimize authorization and real-time data

A robust Shopify Plus fraud prevention strategy involves more than just blocking bad orders; it involves optimizing the approval process for good ones. This requires leveraging better data during the authorization phase.

By collaborating with issuers and utilizing tools like Real-Time Account Updater (RTAU), merchants can keep payment data fresh, reducing technical declines. Furthermore, passing rich data fields—such as device IDs and behavioral biometrics—to the issuer can improve authorization rates. When issuers have more confidence in the transaction data, they are more likely to approve the payment, boosting overall conversion rates.

3. Automate decisioning to solve the “black box” problem

For a truly frictionless checkout on Shopify, speed is non-negotiable. Modern shoppers demand instant gratification; any latency in the checkout process leads to cart abandonment. Data suggests that 22 percent of shoppers abandon their cart due to a complicated checkout process (Baymard).

Without a proportional increase in headcount, automation is essential to scaling, as modern solutions can deliver decisions in under one second. However, automation can create a “black box” problem, leaving merchants without insight into why an order was declined.

This is where explainable AI becomes critical. Merchants need the speed of automation, but also transparency to understand the decision logic. Trusting AI decisions requires visibility into why a decision was made—whether it was due to a velocity check, a device mismatch, or a linkage to a known fraud ring. This transparency givesmerchant teams deeper insight  and helps them verify that the decision aligns with their risk tolerance.

4. Secure a financial safety net with a chargeback guarantee

For CFOs, the volatility of fraud costs is a major pain point. Chargeback fees, lost inventory, and operational overhead make forecasting difficult.

A key strategy for stabilizing the P&L is adopting a fraud solution that offers a chargeback guarantee. In this model, the fraud prevention partner assumes the financial liability for any approved transaction that turns out to be fraudulent.

This shifts the risk entirely off the merchant. It aligns the incentives of the fraud provider with the merchant’s growth—the provider only gets paid if they approve orders, but they lose money if they are wrong. This encourages the provider to maximize approval rates (driving revenue for the merchant) while maintaining extreme accuracy. For the merchant, it transforms fraud from an unpredictable variable into a predictable line item, allowing teams to focus on expansion rather than defense.

Merchant spotlight: Lorna Jane

Challenge: High chargeback rates and excessive manual reviews caused low customer approval rates and regulatory risk.

Result: By moving to Riskified, Lorna Jane saw authorization rates rise from an average of ~82% to consistently between 95% and 98%. Simultaneously, Lorna Jane’s chargebacks dropped substantially and they saw a 54% decrease in fraud.

Read the case study

5.  Approve more without the risk

High-growth Shopify Plus stores require a different caliber of protection than smaller shops. As you expand into new markets and channels, the friction of manual reviews and rigid rules will eventually stall your momentum.

Fraud should never be the reason your Shopify Plus growth slows down. By partnering with Riskified, merchants can automate fraud and abuse management, improve approval rates with chargeback protection, and gain real-time visibility—freeing teams to focus on scaling revenue and profitability instead of managing risk.

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